Creating synthetic digital slides using conditional generative adversarial networks: Application to Ki67 staining

Caglar Senaras, Berkman Sahiner, Gary Tozbikian, Gerard Lozanski, Metin N. Gurcan

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

13 Scopus citations

Abstract

Immunohistochemical staining (IHC) of tissue sections is routinely used in pathology to diagnose and characterize malignant tumors. Unfortunately, in the majority of cases, IHC stain interpretation is completed by a trained pathologist using a manual method, which consists of counting each positively and negatively stained cell under a microscope. Even in the hands of expert pathologists, the manual enumeration suffers from poor reproducibility. In this study, we propose a novel method to create artificial datasets in silico with known ground truth, allowing us to analyze the accuracy, precision, and intra-And inter-observer variability in a systematic manner and compare different computer analysis approaches. Our approach employs conditional Generative Adversarial Networks. We created our dataset by using 32 different breast cancer patients' Ki67 stained tissues. Our experiments indicated that synthetic images are indistinguishable from real images: The accuracy of five experts (3 pathologists and 2 image analysts) in distinguishing between 15 real and 15 synthetic images was only 47.3% (±8.5%).

Original languageEnglish
Title of host publicationMedical Imaging 2018
Subtitle of host publicationDigital Pathology
EditorsMetin N. Gurcan, John E. Tomaszewski
PublisherSPIE
ISBN (Electronic)9781510616516
DOIs
StatePublished - 2018
EventMedical Imaging 2018: Digital Pathology - Houston, United States
Duration: Feb 11 2018Feb 12 2018

Publication series

NameProgress in Biomedical Optics and Imaging - Proceedings of SPIE
Volume10581
ISSN (Print)1605-7422

Other

OtherMedical Imaging 2018: Digital Pathology
Country/TerritoryUnited States
CityHouston
Period02/11/1802/12/18

Keywords

  • Conditional Generative Adversarial Networks
  • Immunohistochemical staining
  • Synthetic Digital Slides

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